Fork me on GitHub

fbrain

Fbrain is a ERC funded project. The purpose of this project is to develop image processing tools for a better understanding of the fetal brain development.

Studies about brain maturation aim at providing a better understanding of brain development and links between brain changes and cognitive development. Such studies are of great interest for diagnosis help and clinical course of development and treatment of illnesses. Several teams have begun to make 3D maps of developing brain structures from children to young adults. However, working out the development of fetal and neonatal brain remains an open issue. This project aims at jumping over several theoretical and practical barriers and at going beyond the formal description of the brain maturation thanks to the development of a realistic numerical model of brain aging.

BTK (baby brain toolkit), which is the toolkit developed for the fbrain project, consists of several image processing tools: image reconstruction, image denoising, image segmentation, tractography etc.

Examples

Super-Resolution

Super-Resolution
Left: original low-resolution image, right: reconstructed image.

Tractography

Coronal view of the tractography Sagittal view of the tractography
Coronal and sagital views of white matter tractography of a fetal brain (corpus callosum, pyramidal fasciculus).

Downloads

Binaries are available at NITRC website.
Latest version is available on github:
$ git clone git://github.com/rousseau/fbrain

For Further informations, here is the documentation (PDF), and here is a link to the QuickStart wiki page.


Contact us


License

This software is governed by the CeCILL-B license under French law and abiding by the rules of distribution of free software. You can use, modify and/ or redistribute the software under the terms of the CeCILL-B license as circulated by CEA, CNRS and INRIA at the following URL "http://www.cecill.info". As a counterpart to the access to the source code and rights to copy, modify and redistribute granted by the license, users are provided only with a limited warranty and the software's author, the holder of the economic rights, and the successive licensors have only limited liability. In this respect, the user's attention is drawn to the risks associated with loading, using, modifying and/or developing or reproducing the software by the user in light of its specific status of free software, that may mean that it is complicated to manipulate, and that also therefore means that it is reserved for developers and experienced professionals having in-depth computer knowledge. Users are therefore encouraged to load and test the software's suitability as regards their requirements in conditions enabling the security of their systems and/or data to be ensured and, more generally, to use and operate it in the same conditions as regards security.