About me

I am a professor at IMT Atlantique and a research scientist at LaTIM (Inserm) in Brest, in the field of computational imaging. My research focuses on computational methods and machine learning for medical image analysis, with applications to the neuro-musculoskeletal system and especially early brain development: fetal and neonatal brain MRI, super-resolution reconstruction, segmentation, cortical surface analysis and modelling of brain growth. I am also working on computational imaging for ultra-low field MRI.

Software

With my team, I develop oxide, an open-source suite written in Rust for fetal brain MRI, from the acquired data to the simulation of cortical folding (macOS and Linux; documentation in French).

• medoxide: fetal brain extraction, slice-to-volume reconstruction and tissue segmentation
• surfoxide: white and pial cortical surfaces, mesh quality control and cortical measures
• gyroxide: GPU simulation of cortical folding by tangential growth
• guioxide: graphical interface to follow a subject through the pipeline, from a BIDS dataset to the simulation

Team

• PhD students: David Vigouroux, Robin Schnabel, Le Minh Triet Tran, Daniel Zhu
• Postdocs: Lucile Quillien, Florian Scalvini
• Research engineer: Moritz Baumann

Former students and postdocs are listed in my CV.